Poaceae Statistics

GNPAnnot Saccharum hybrid cultivar Statistics
Unique Name	Clone Name	Alias	Accession Number	Length (bp)	Predicted Gene Count	Current Gene count	Curated Gene Count	Obsolete Gene Count	Current Gene Density (bp/gene)	%Current Gene (scaffold length)	%Curated Gene (scaffold length)	%Curated Gene (overall genes)	Predicted TE Count	Current TE Count	Curated TE Count	Current TE Density (bp/TE)	%Current TE (scaffold length)	%Curated TE (scaffold length)	%Curated TE (overall TE)	Current TE Gene count
scaffold_0025				116097	38	30	30	0	3870	60%	60%	79%	1	1	0	116097	10%	n/a	0%	8
scaffold_0026	Sh172H13			113124	40	33	33	0	3428	60%	60%	83%	1	1	0	113124	3%	n/a	0%	7
scaffold_0027	ShCIRB286F09-ShCIRB251D13c			135129	42	29	35	6	4660	37%	59%	83%	4	4	1	33782	27%	7%	25%	7
Sh011F05	Sh011F05			65821	22	22	22	0	2992	83%	83%	100%	1	1	0	65821	17%	n/a	0%	0
Sh013O22	Sh013O22			56351	18	18	18	0	3131	80%	80%	100%	3	3	0	18784	32%	n/a	0%	0
Sh045D09	Sh045D09			71852	18	18	18	0	3992	82%	82%	100%	2	2	0	35926	27%	n/a	0%	0
Sh051L01	Sh051L01			97616	25	25	25	0	3905	93%	93%	100%	2	2	0	48808	12%	n/a	0%	0
Sh102M23	Sh102M23			129132	32	32	32	0	4035	79%	91%	100%	5	5	0	25826	27%	n/a	0%	0
Sh109A01	Sh109A01			70182	21	21	21	0	3342	74%	74%	100%	2	2	0	35091	17%	n/a	0%	0
Sh111P05	Sh111P05			61426	22	22	22	0	2792	86%	86%	100%	2	2	0	30713	38%	n/a	0%	0
Sh113J05	Sh113J05			129775	37	37	37	0	3507	81%	81%	100%	4	4	0	32444	25%	n/a	0%	0
Sh114N17	Sh114N17			139590	37	37	37	0	3773	78%	78%	100%	3	3	0	46530	15%	n/a	0%	0
Sh128J07	Sh128J07			153732	45	45	45	0	3416	77%	79%	100%	5	5	0	30746	20%	n/a	0%	0
Sh152G15	Sh152G15			111770	31	31	31	0	3605	86%	86%	100%	3	3	0	37257	14%	n/a	0%	0
Sh172H13	Sh172H13			126653	31	31	31	0	4086	90%	90%	100%	2	2	0	63327	12%	n/a	0%	0
Sh182G15	Sh182G15			104875	27	27	27	0	3884	90%	90%	100%	3	3	0	34958	18%	n/a	0%	0
Sh188C19	Sh188C19			107456	30	30	30	0	3582	82%	89%	100%	3	3	0	35819	21%	n/a	0%	0
Sh191F17	Sh191F17			103194	28	28	28	0	3686	79%	79%	100%	3	3	0	34398	30%	n/a	0%	0
Sh192N12	Sh192N12			87763	31	31	31	0	2831	88%	94%	100%	4	4	0	21941	20%	n/a	0%	0
Sh206M17	Sh206M17			119738	26	26	26	0	4605	85%	95%	100%	2	2	0	59869	11%	n/a	0%	0
Sh209M19	Sh209M19			113570	27	27	27	0	4206	83%	90%	100%	4	4	0	28393	13%	n/a	0%	0
Sh218E07	Sh218E07			70979	17	17	17	0	4175	75%	75%	100%	0	0	0	n/a	n/a	n/a	n/a	0
Sh236B10	Sh236B10			18391	8	8	8	0	2299	89%	89%	100%	0	0	0	n/a	n/a	n/a	n/a	0
Sh237G05	Sh237G05			117859	27	27	27	0	4365	68%	68%	100%	3	3	0	39286	20%	n/a	0%	0
Sh242M02	Sh242M02			149532	36	36	36	0	4154	86%	86%	100%	3	3	0	49844	17%	n/a	0%	0
Sh243J23	Sh243J23			109427	31	31	31	0	3530	74%	74%	100%	0	0	0	n/a	n/a	n/a	n/a	0
Sh245F09	Sh245F09			122703	34	34	34	0	3609	93%	93%	100%	2	2	0	61352	7%	n/a	0%	0
Sh248P21	Sh248P21			105555	27	27	27	0	3909	82%	82%	100%	2	2	0	52778	8%	n/a	0%	0
Sh260O19	Sh260O19			128822	30	30	30	0	4294	64%	74%	100%	4	4	0	32206	16%	n/a	0%	0
Sh265O22	Sh265O22			126105	34	34	34	0	3709	88%	88%	100%	2	2	0	63053	9%	n/a	0%	0
ShCIRB046E08	ShCIRB046E08			62791	15	15	15	0	4186	75%	75%	100%	0	0	0	n/a	n/a	n/a	n/a	0
ShCIRB236L05	ShCIRB236L05			17309	2	2	2	0	8655	95%	95%	100%	0	0	0	n/a	n/a	n/a	n/a	0
FN431661	ShCIR12E03	ShCIR012E03	FN431661	84926	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431662	SB_BBc_24P17	Sb024P17c	FN431662	119613	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431663	Sh15N23	Sh015N23	FN431663	137851	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431664	Sh53A11	Sh053A11	FN431664	81164	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431665	Sh135P16		FN431665	142236	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431666	Sh142J21		FN431666	126547	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431667	Sh197G04		FN431667	141630	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431668	Sh253G12		FN431668	158483	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
FN431669	ShCIR9O20	ShCIR009O20	FN431669	87631	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
scaffold_0001	265O22	Sh265O22	AM403007	126105	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
scaffold_0002	51L01	Sh051L01	AM403006	97616	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
scaffold_0023	188C19	Sh188C19		86420	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
Sh186P07	Sh186P07			102030	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
ShCIRB210D07	CIRB210D07	ShCIRB210D07		42796	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
So057E04	SOLAP_057_E04			95342	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
So096B11	SOLAP_096_B11			101291	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
So099P01	SOLAP_099_P01			74354	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
So146H19	SOLAP_146_H19			77460	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
Ss023K06	SSSES208_023_K06			127658	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
Ss075D04	SSSES208_075_D04			72729	0	0	0	0	n/a	0%	0%	n/a	0	0	0	n/a	n/a	n/a	n/a	0
Overall: 52 scaffolds				5328201	889	861	867	6	6188	48%	49%	98%	75	75	1	71043	10%	0%	1%	22

Calculation details:

genes count excludes transposable element genes (TE gene);
genes length excludes transposable element genes (TE gene) and transposable elements (TE) inside introns;
predicted genes are genes found by Eugene;
current gene count includes non-obsolete predicted or curated genes;
curated genes include obsolete genes;
genes density is given by the formula: scaffold length / current gene count
percent of genes is given by the formula: overall current gene length / scaffold length;
percent of curated genes over scaffold length is given by the formula: overall curated gene length / scaffold length
percent of curated genes over all genes is given by the formula: curated gene count / predicted gene count
predicted transposable elements (TE) are TE found by Repet;
current TE count includes non-obsolete predicted or curated TE with a /mobile_element qualifier;
curated TE include obsolete TE;
TE density is given by the formula: scaffold length / current TE count
curated TE density is given by the formula: scaffold length / curated TE count
percent of TE is given by the formula: overall current TE length / scaffold length
percent of curated TE over all scaffold length is given by the formula: overall curated TE length / scaffold length
percent of curated TE over all transposable elements is given by the formula: curated TE count / predicted TE count

Note: these statistics are restricted to public data only.

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