Poaceae Statistics

GNPAnnot Saccharum hybrid cultivar Statistics
Unique NameClone NameAliasAccession NumberLength (bp)Predicted Gene CountCurrent Gene countCurated Gene CountObsolete Gene CountCurrent Gene Density (bp/gene)%Current Gene (scaffold length)%Curated Gene (scaffold length)%Curated Gene (overall genes)Predicted TE CountCurrent TE CountCurated TE CountObsolete TE CountCurrent TE Density (bp/TE)%Current TE (scaffold length)%Curated TE (scaffold length)%Curated TE (overall TE)Current TE Gene countCurated TE Gene count
FN431661ShCIR12E03ShCIR012E03FN431661849260000n/a0%0%n/a014140606657%57%n/a00
FN431662SB_BBc_24P17Sb024P17cFN4316621196130000n/a0%0%n/a05002392315%n/an/a00
FN431663Sh15N23Sh015N23FN4316631378510000n/a0%0%n/a05832757027%27%n/a00
FN431664Sh53A11Sh053A11FN431664811640000n/a0%0%n/a04622029124%24%n/a00
FN431665Sh135P16FN4316651422360000n/a0%0%n/a0101001422415%15%n/a00
FN431666Sh142J21FN4316661265470000n/a0%0%n/a06602109160%60%n/a00
FN431667Sh197G04FN4316671416300000n/a0%0%n/a09901573739%39%n/a00
FN431668Sh253G12FN4316681584830000n/a0%0%n/a0111211440834%34%n/a00
FN431669ShCIR9O20ShCIR009O20FN431669876310000n/a0%0%n/a071031251953%53%n/a00
scaffold_0001265O22Sh265O22AM4030071261050000n/a0%0%n/a03100406824%n/an/a00
scaffold_000251L01Sh051L01AM403006976160000n/a0%0%n/a02100464832%n/an/a00
Overall: 11 scaffolds13038020000n/an/an/an/a01237591060034%28%61%00

Calculation details:

  • genes count excludes transposable element genes (TE gene);
  • genes length excludes transposable element genes (TE gene) and transposable elements (TE) inside introns;
  • predicted genes are genes found by Eugene;
  • current gene count includes non-obsolete predicted or curated genes;
  • curated genes include obsolete genes;
  • genes density is given by the formula: scaffold lengthcurrent gene count
  • percent of genes is given by the formula: overall current gene lengthscaffold length;
  • percent of curated genes over scaffold length is given by the formula: overall curated gene lengthscaffold length
  • percent of curated genes over all genes is given by the formula: curated gene countpredicted gene count
  • predicted transposable elements (TE) are TE found by Repet;
  • current TE count includes non-obsolete predicted or curated TE with a /mobile_element qualifier;
  • curated TE include obsolete TE;
  • TE density is given by the formula: scaffold lengthcurrent TE count
  • curated TE density is given by the formula: scaffold lengthcurated TE count
  • percent of TE is given by the formula: overall current TE lengthscaffold length
  • percent of curated TE over all scaffold length is given by the formula: overall curated TE lengthscaffold length
  • percent of curated TE over all transposable elements is given by the formula: curated TE countpredicted TE count

Note: these statistics are restricted to public data only.