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Musaceae Statistics

GNPAnnot Musaceae Statistics
Unique Name Clone Name Alias Accession Number Length (bp) Genes Count Gene Density %Gene Curated Genes Count %Curated Genes (scaffold length) %Curated Genes (overall genes) TE Count TE Density %TE Curated TE Count Curated TE Density %Curated TE (overall TE) Gag-Pol Count
scaffold_0001 Ma4001J14 MA4-1J14 AC226035 104637 18 5813 13% 2 1% 11% 44 2378 48% 8 13080 18% 6
scaffold_0002 Ma4001C21 MA4-1C21   145629 14 10402 5% 0 n/a 0% 43 3387 62% 18 8091 42% 4
scaffold_0005 Ma4071P20 MA4-71P20 AC226045 95242 13 7326 52% 7 45% 54% 18 5291 11% 1 95242 6% 0
scaffold_0006 Ma4002G17 2G17 AC226036 37847 3 12616 20% 1 3% 33% 22 1720 59% 3 12616 14% 0
scaffold_0012 Ma4003F03 MA4-3F3 AC226038 124825 30 4161 28% 3 4% 10% 59 2116 59% 8 15603 14% 4
scaffold_0013 Ma4004L11 MA4-4L11 AC226041 58704 11 5337 37% 4 29% 36% 32 1835 25% 0 n/a 0% 0
scaffold_0015 Ma4003G18 MA4-3G18 AC226039 86265 21 4108 45% 7 24% 33% 33 2614 10% 0 n/a 0% 0
scaffold_0016 Ma4009F20 MA4-9F20 AC226049 92303 21 4395 65% 7 25% 33% 28 3297 6% 0 n/a 0% 0
scaffold_0017 Ma4042M13 MA4_42M13 AC186749 29567 7 4224 52% 3 35% 43% 0 n/a n/a 0 n/a n/a 0
scaffold_0018 Ma4052N02 MA4-52N2 AC226042 73023 10 7302 23% 1 2% 10% 25 2921 39% 3 24341 12% 0
scaffold_0019 MbP071C19 MBP_71C19 AP009325 133041 22 6047 45% 0 n/a 0% 1 133041 13% 1 133041 100% 4
scaffold_0023 Ma4057L19 MA4-57L19 AC226043 95303 19 5016 41% 7 18% 37% 27 3530 6% 0 n/a 0% 0
scaffold_0025 Ma4069C10 MA4-69C10 AC226044 74174 15 4945 32% 4 21% 27% 33 2248 17% 1 74174 3% 1
scaffold_0027 MbP064B17 MBP-64B17 AC226052 198395 35 5668 45% 10 21% 29% 92 2156 21% 2 99198 2% 2
scaffold_0029 MbP094I16 MBP_94I16 AP009326 119244 23 5185 38% 0 n/a 0% 34 3507 32% 1 119244 3% 6
scaffold_0030 MbP091N22 MBP_91N22 AC186755 154246 36 4285 59% 36 59% 100% 41 3762 11% 0 n/a 0% 0
scaffold_0031 MbP006L16 MBP-6L16 AC226053 136446 27 5054 30% 10 14% 37% 53 2574 24% 0 n/a 0% 5
scaffold_0032 MbP081C12 MBP_81C12 AC186754 142973 24 5957 63% 24 65% 100% 48 2979 14% 0 n/a 0% 0
scaffold_0033 MbP008E04 MBP-8E4 AC226055 106121 13 8163 45% 2 4% 15% 48 2211 20% 3 35374 6% 0
scaffold_0034 Ma4111B14 MA4_111B14 AC186954 144091 23 6265 47% 5 18% 22% 53 2719 12% 1 144091 2% 0
scaffold_0035 Ma4054B05 MA4_54B05 AC186753 54106 9 6012 29% 2 14% 22% 18 3006 70% 3 18035 17% 1
scaffold_0036 Ma4099N22 MA4-99N22 AC226048 134662 19 7087 14% 0 n/a 0% 55 2448 89% 12 11222 22% 14
scaffold_0037 Ma4008L21 MA4_8L21 AC186748 113519 28 4054 54% 14 39% 50% 23 4936 4% 0 n/a 0% 0
scaffold_0038 Ma4005B18 MA4-5B18   81560 14 5826 47% 5 6% 36% 15 5437 28% 1 81560 7% 0
scaffold_0039 Ma4078I12 MA4_78I12 AC186750 148170 18 8232 13% 0 n/a 0% 76 1950 92% 6 24695 8% 11
scaffold_0040 Ma4002N14 MA4-2N14   62242 11 5658 68% 6 53% 55% 4 15561 1% 0 n/a 0% 0
scaffold_0041 Ma4007O19 MA4-7O19   127062 26 4887 25% 6 13% 23% 73 1741 58% 8 15883 11% 4
scaffold_0042 Ma4009J11 MA4-9J11   74122 16 4633 53% 8 33% 50% 15 4941 4% 1 74122 7% 0
scaffold_0043 MbP031O07 MBP_31O07 AP009334 131526 11 11957 6% 6 0% 55% 26 5059 49% 10 13153 38% 15
scaffold_0044 MBP-29H14 MbP029H14   104015 6 17336 7% 2 1% 33% 17 6119 72% 14 7430 82% 4
scaffold_0045 MaC088K20 MAC-88K20 AC226051 152711 21 7272 48% 18 49% 86% 6 25452 19% 6 25452 100% 3
scaffold_0046 Ma4082I11 MA4_82I11 AC186955 102232 20 5112 59% 20 60% 100% 40 2556 12% 0 n/a 0% 0
scaffold_0047 Ma4086B03 MA4-86B3 AC226047 87766 13 6751 22% 0 n/a 0% 41 2141 44% 2 43883 5% 2
scaffold_0048 C4BAMMuG9 C4BAM-MuG9   73268 10 7327 26% 2 9% 20% 29 2526 48% 4 18317 14% 0
scaffold_0049 C4BAMMuH9 C4BAM-MuH9   82723 13 6363 43% 4 17% 31% 20 4136 7% 0 n/a 0% 1
scaffold_0050 Ma4011M06 MA4-11M6 AC226031 61335 7 8762 62% 4 22% 57% 15 4089 6% 0 n/a 0% 0
scaffold_0051 Ma4012B06 MA4-12B6 AC226032 91293 14 6521 32% 2 3% 14% 59 1547 44% 5 18259 8% 1
scaffold_0052 Ma4017L09 MA4-17L9 AC226033 92078 18 5115 53% 9 24% 50% 38 2423 13% 0 n/a 0% 2
scaffold_0053 Ma4018J06 MA4-18J6 AC226034 76327 17 4490 32% 5 13% 29% 20 3816 17% 0 n/a 0% 1
scaffold_0054 Ma4025J11 MA4_25J11 AC186746 105019 21 5001 55% 7 24% 33% 24 4376 10% 0 n/a 0% 0
scaffold_0055 Ma4030C11 MA4-30C11 AC226037 71163 17 4186 44% 9 23% 53% 39 1825 13% 0 n/a 0% 0
scaffold_0056 Ma4048G03 MA4-48G3 AC226040 108948 18 6053 54% 5 14% 28% 44 2476 13% 0 n/a 0% 0
scaffold_0057 Ma4054N07 MA4_54N07 AC186751 96443 20 4822 47% 20 47% 100% 19 5076 8% 0 n/a 0% 0
scaffold_0058 Ma4064C22 MA4_64C22 AC186752 80932 18 4496 20% 3 6% 17% 42 1927 29% 2 40466 5% 1
scaffold_0059 Ma4072F16 MA4-72F16 AC226046 180124 36 5003 31% 3 7% 8% 90 2001 47% 11 16375 12% 8
scaffold_0060 Ma4106O17 MA4_106O17 AC186747 141025 29 4863 55% 11 31% 38% 26 5424 3% 0 n/a 0% 0
scaffold_0061 Ma4112I10 MA4_112I10 AC186756 102441 21 4878 49% 7 14% 33% 4 25610 16% 4 25610 100% 1
scaffold_0062 Ma4125A12 MA4-125A12 AC226196 110853 17 6521 42% 5 9% 29% 42 2639 33% 4 27713 10% 1
scaffold_0064 MaC077E20 MAC-77E20 AC226050 177729 25 7109 51% 20 46% 80% 59 3012 27% 5 35546 8% 2
Overall: 49 scaffolds 5177470 898 5766 39% 336 20% 37% 1713 3022 29% 148 34983 14% 104

Calculation details:

  • genes count excludes transposable element genes (Gag-Pol);
  • genes length excludes transposable element genes (Gag-Pol) and transposable elements inside introns;
  • genes density is given by the formula: scaffold length / genes count
  • percent of genes is given by the formula: overall genes length / scaffold length;
  • percent of curated genes over scaffold length is given by the formula: overall curated genes length / scaffold length
  • percent of curated genes over all genes is given by the formula: curated genes count / genes count
  • transposable elements density is given by the formula: scaffold length / transposable elements count
  • percent of transposable elements is given by the formula: overall transposable elements length / scaffold length
  • percent of curated transposable elements over all transposable elements is given by the formula: curated transposable elements count / transposable elements count

Note: these statistics are restricted to public data only.