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Musaceae Statistics

GNPAnnot Musaceae Statistics
Unique NameClone NameAliasAccession NumberLength (bp)Predicted Gene CountCurrent Gene countCurated Gene CountObsolete Gene CountCurrent Gene Density (bp/gene)%Current Gene (scaffold length)%Curated Gene (scaffold length)%Curated Gene (overall genes)Predicted TE CountCurrent TE CountCurated TE CountObsolete TE CountCurrent TE Density (bp/TE)%Current TE (scaffold length)%Curated TE (scaffold length)%Curated TE (overall TE)Current TE Gene countCurated TE Gene count
scaffold_0001Ma4001J14MA4-1J14AC226035104637301765615512%2%20%70443527237848%25%50%73
scaffold_0002Ma4001C21MA4-1C21 145629241477104025%2%29%71434729338762%46%66%41
scaffold_0005Ma4071P20MA4-71P20AC22604595242121370732652%44%58%181810529111%5%6%00
scaffold_0006Ma4002G172G17AC2260363784733101261620%3%33%2922107172059%37%34%00
scaffold_0008MbP008A02MBP-8A2AC226054124336242480518153%23%33%20200062174%n/a0%00
scaffold_0009MbP036B13MBP-36B13 2236944536314621442%33%69%0202001118515%15%n/a52
scaffold_0012Ma4003F03MA4-3F3AC226038124825363052416128%6%14%84593426211659%33%40%43
scaffold_0013Ma4004L11MA4-4L11AC22604158704111140533737%28%36%323200183525%n/a0%00
scaffold_0015Ma4003G18MA4-3G18AC22603986265212170410845%24%33%333300261410%n/a0%00
scaffold_0016Ma4009F20MA4-9F20AC22604992303212170439565%24%33%28280032976%n/a0%00
scaffold_0017Ma4042M13MA4_42M13AC186749295677730422452%35%43%0000n/an/an/an/a00
scaffold_0018Ma4052N02MA4-52N2AC22604273023121032730223%3%25%39251714292139%33%44%00
scaffold_0019MbP071C19MBP_71C19AP009325133041262200604745%0%0%601605913304113%13%100%41
scaffold_0021MBP-32N20MbP032N20c 2533665638457666842%44%80%139212101206518%18%15%61
scaffold_0023Ma4057L19MA4-57L19AC22604395303191970501641%18%37%27270035306%n/a0%00
scaffold_0025Ma4069C10MA4-69C10AC22604474174171551494532%22%29%363343224817%8%11%11
scaffold_0027MbP064B17MBP-64B17AC2260521983953735100566845%21%27%959253215621%2%5%20
scaffold_0029MbP094I16MBP_94I16AP009326119244292300518538%0%0%65343231350732%17%49%60
scaffold_0030MbP091N22MBP_91N22AC1867551542463636371428559%60%103%414100376211%n/a0%00
scaffold_0031MbP006L16MBP-6L16AC2260531364463227100505430%14%31%535300257424%n/a0%52
scaffold_0032MbP081C12MBP_81C12AC1867541429732424240595763%63%100%484800297914%n/a0%00
scaffold_0033MbP008E04MBP-8E4AC226055106121141210884344%4%7%504852221120%13%10%11
scaffold_0034Ma4111B14MA4_111B14AC186954144091242361626547%18%25%545321271912%3%4%00
scaffold_0035Ma4054B05MA4_54B05AC1867535410612942601229%15%33%32181714300670%57%53%10
scaffold_0036Ma4099N22MA4-99N22AC226048134662341911708714%2%3%85513931264079%33%46%143
scaffold_0037Ma4008L21MA4_8L21AC1867481135192928140405454%39%48%23230049364%n/a0%00
scaffold_0038Ma4005B18MA4-5B18 81560141450582647%6%36%33151918543728%24%58%00
scaffold_0039Ma4078I12MA4_78I12AC18675014817041181111823213%9%27%122765145195092%34%42%111
scaffold_0040Ma4002N14MA4-2N14 62242111160565868%53%55%4400155611%n/a0%00
scaffold_0041Ma4007O19MA4-7O19 127062302660488725%13%20%84731911174158%20%23%41
scaffold_0042Ma4009J11MA4-9J11 74122161680463353%33%50%15151049414%1%7%00
scaffold_0043MbP031O07MBP_31O07AP00933413152632112519119576%11%78%16426151141505949%42%92%1514
scaffold_0045MaC088K20MAC-88K20AC22605115271130203013763646%54%100%62658522545219%19%94%44
scaffold_0046Ma4082I11MA4_82I11AC1869551022321620200511259%59%125%404000255612%n/a0%00
scaffold_0047Ma4086B03MA4-86B3AC22604787766171322675122%1%12%464175214144%15%15%20
scaffold_0048C4BAMMuG9C4BAM-MuG9 73268111031732726%9%27%44291915252648%36%43%00
scaffold_0049C4BAMMuH9C4BAM-MuH9 82723141340636343%16%29%20200041367%n/a0%10
scaffold_0050Ma4011M06MA4-11M6AC226031613357740876262%22%57%15150040896%n/a0%00
scaffold_0051Ma4012B06MA4-12B6AC22603291293151420652132%3%13%6759138154744%15%19%10
scaffold_0052Ma4017L09MA4-17L9AC22603392078201890511553%24%45%383800242313%n/a0%20
scaffold_0053Ma4018J06MA4-18J6AC22603476327181750449032%13%28%202000381617%n/a0%10
scaffold_0054Ma4025J11MA4_25J11AC186746105019212170500155%24%33%242400437610%n/a0%00
scaffold_0055Ma4030C11MA4-30C11AC22603771163171790418644%23%53%393900182513%n/a0%00
scaffold_0056Ma4048G03MA4-48G3AC226040108948181850605354%14%28%444400247613%n/a0%00
scaffold_0057Ma4054N07MA4_54N07AC186751964432020200482247%47%100%19190050768%n/a0%00
scaffold_0058Ma4064C22MA4_64C22AC18675280932201841449620%8%20%5042108192729%10%20%11
scaffold_0059Ma4072F16MA4-72F16AC226046180124463652500331%8%11%105902615200147%20%25%80
scaffold_0060Ma4106O17MA4_106O17AC1867471410252929110486355%31%38%26260054243%n/a0%00
scaffold_0061Ma4112I10MA4_112I10AC186756102441232181487849%15%35%35435312561016%16%100%11
scaffold_0062Ma4125A12MA4-125A12AC2261961108532417116652142%21%46%574284263933%20%14%11
scaffold_0064MaC077E20MAC-77E20AC22605017772941253111710951%53%76%71591712301227%17%24%22
Overall: 51 scaffolds56748511186987504100575040%23%42%24761753783612323727%13%45%11443

Calculation details:

  • genes count excludes transposable element genes (TE gene);
  • genes length excludes transposable element genes (TE gene) and transposable elements (TE) inside introns;
  • predicted genes are genes found by Eugene;
  • current gene count includes non-obsolete predicted or curated genes;
  • curated genes include obsolete genes;
  • genes density is given by the formula: scaffold length / current gene count
  • percent of genes is given by the formula: overall current gene length / scaffold length;
  • percent of curated genes over scaffold length is given by the formula: overall curated gene length / scaffold length
  • percent of curated genes over all genes is given by the formula: curated gene count / predicted gene count
  • predicted transposable elements (TE) are TE found by Repet;
  • current TE count includes non-obsolete predicted or curated TE with a /mobile_element qualifier;
  • curated TE include obsolete TE;
  • TE density is given by the formula: scaffold length / current TE count
  • curated TE density is given by the formula: scaffold length / curated TE count
  • percent of TE is given by the formula: overall current TE length / scaffold length
  • percent of curated TE over all scaffold length is given by the formula: overall curated TE length / scaffold length
  • percent of curated TE over all transposable elements is given by the formula: curated TE count / predicted TE count

Note: these statistics are restricted to public data only.