Musaceae Statistics (2)

GNPAnnot Musaceae Statistics (Scaffold)
Unique Name	Clone Name	Length (bp)	Predicted Gene Count	Current Gene Density (bp/gene)	%Current Gene (scaffold length)	%Curated Gene (scaffold length)	%Curated Gene (overall genes)	Predicted TE Count	Current TE Density (bp/TE)	%Current TE (scaffold length)	%Curated TE (scaffold length)	%Curated TE (overall TE)
scaffold_0133	scaffold02452	87107	14	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0135	scaffold02493	41329	6	n/a	0%	0%	0%	1	n/a	n/a	n/a	0%
scaffold_0136	scaffold02586	291744	43	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0138	scaffold02606	83710	15	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0139	scaffold02635	27561	3	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0142	scaffold02702	116706	21	n/a	0%	0%	0%	1	n/a	n/a	n/a	0%
scaffold_0143	scaffold02716	116041	21	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0144	scaffold02874	21926	4	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0145	scaffold02928	15158	1	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0146	scaffold03008	20839	3	n/a	0%	0%	0%	1	n/a	n/a	n/a	0%
scaffold_0147	scaffold03068	23432	3	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0148	scaffold03152	20475	9	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0150	scaffold03225	3414	1	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0151	scaffold03287	22240	5	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
scaffold_0154	scaffold03363	19299	3	n/a	0%	0%	0%	0	n/a	n/a	n/a	n/a
Overall: 15 scaffolds		910981	152	n/a	n/a	n/a	n/a	3	n/a	n/a	n/a	n/a

Calculation details:

genes count excludes transposable element genes (TE gene);
genes length excludes transposable element genes (TE gene) and transposable elements (TE) inside introns;
predicted genes are genes found by Eugene;
current gene count includes non-obsolete predicted or curated genes;
curated genes include obsolete genes;
genes density is given by the formula: scaffold length / current gene count
percent of genes is given by the formula: overall current gene length / scaffold length;
percent of curated genes over scaffold length is given by the formula: overall curated gene length / scaffold length
percent of curated genes over all genes is given by the formula: curated gene count / predicted gene count
predicted transposable elements (TE) are TE found by Repet;
current TE count includes non-obsolete predicted or curated TE with a /mobile_element qualifier;
curated TE include obsolete TE;
TE density is given by the formula: scaffold length / current TE count
curated TE density is given by the formula: scaffold length / curated TE count
percent of TE is given by the formula: overall current TE length / scaffold length
percent of curated TE over all scaffold length is given by the formula: overall curated TE length / scaffold length
percent of curated TE over all transposable elements is given by the formula: curated TE count / predicted TE count

Note: these statistics are restricted to public data only.

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