1 | man_ms724_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te010 | 1042 | 1092 | 51 | reverse | automatic | Ma4003F03_te010 | |
2 | man_ms687_Ma4003F03_Musa_Recon_325_Malign_12:NoCat | Ma4003F03_te020 | 2915 | 3020 | 106 | forward | automatic | Ma4003F03_te020 | |
3 | man_ms725_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te030 | 3021 | 3698 | 678 | forward | automatic | Ma4003F03_te030 | |
4 | man_ms764_Ma4003F03_Musa_Grouper_109_Malign_6:LARD | Ma4003F03_te040 | 3699 | 4106 | 408 | reverse | automatic | Ma4003F03_te040 | |
5 | man_ms694_Ma4003F03_Musa_Recon_348_Malign_3:LTRuncomp | Ma4003F03_te050 | 4841 | 4903 | 63 | reverse | automatic | Ma4003F03_te050 | |
6 | man_ms695_Ma4003F03_Musa_Recon_348_Malign_3:LTRuncomp | Ma4003F03_te060 | 5090 | 5152 | 63 | reverse | automatic | Ma4003F03_te060 | |
7 | man_ms696_Ma4003F03_Musa_Grouper_96_Malign_3:LARD | Ma4003F03_te070 | 7279 | 7353 | 75 | reverse | automatic | Ma4003F03_te070 | |
8 | man_ms697_Ma4003F03_Musa_Grouper_96_Malign_3:LARD | Ma4003F03_te080 | 7405 | 7480 | 76 | reverse | automatic | Ma4003F03_te080 | |
9 | man_ms698_Ma4003F03_Musa_Grouper_96_Malign_3:LARD | Ma4003F03_te090 | 7694 | 7760 | 67 | reverse | automatic | Ma4003F03_te090 | |
10 | man_ms699_Ma4003F03_Musa_Grouper_96_Malign_3:LARD | Ma4003F03_te100 | 7781 | 7893 | 113 | reverse | automatic | Ma4003F03_te100 | |
11 | man_ms700_Ma4003F03_Musa_Grouper_96_Malign_3:LARD | Ma4003F03_te110 | 7894 | 8632 | 739 | reverse | automatic | Ma4003F03_te110 | |
12 | man_ms701_Ma4003F03_Musa_Recon_99_Malign_20:LTRcomp | Ma4003F03_te130 | 8641 | 9434 | 794 | reverse | automatic | Ma4003F03_te130 | |
13 | man_ms758_Ma4003F03_Musa_Grouper_241_Malign_3:LTRcomp | Ma4003F03_te120 | 8641 | 9434 | 794 | forward | automatic | Ma4003F03_te120 | |
14 | man_ms690_Ma4003F03_Musa_Grouper_243_Malign_4:LTRuncomp | Ma4003F03_te140 | 9435 | 10543 | 1109 | forward | automatic | Ma4003F03_te140 | |
15 | man_ms704_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te150 | 10547 | 11535 | 989 | reverse | automatic | Ma4003F03_te150 | |
16 | man_ms705_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te160 | 11536 | 11833 | 298 | reverse | automatic | Ma4003F03_te160 | |
17 | man_ms734_Ma4003F03_Musa_Grouper_239_Malign_3:LARD | Ma4003F03_te170 | 11834 | 12078 | 245 | reverse | automatic | Ma4003F03_te170 | |
18 | man_ms768_Ma4003F03_Musa_Recon_346_Malign_5:confused | Ma4003F03_te180 | 14090 | 14140 | 51 | reverse | automatic | Ma4003F03_te180 | |
19 | man_ms770_Ma4003F03_Musa_Recon_78_Malign_11:NoCat | Ma4003F03_te190 | 14141 | 15038 | 898 | forward | automatic | Ma4003F03_te190 | |
20 | man_ms726_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te200 | 15039 | 17483 | 2445 | reverse | automatic | Ma4003F03_te200 | |
21 | man_ms714_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te210 | 15308 | 15392 | 85 | forward | automatic | Ma4003F03_te210 | |
22 | man_ms761_Ma4003F03_Musa_Recon_80_Malign_4:LTRuncomp | Ma4003F03_te220 | 16415 | 16444 | 30 | reverse | automatic | Ma4003F03_te220 | |
23 | man_ms727_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te230 | 17685 | 18364 | 680 | reverse | curated | retrotransposon: LTR: Circe: Ma4003F03_te230 Solo LTR (fragment) | cpoiron |
24 | man_ms688_Ma4003F03_Musa_Recon_325_Malign_12:NoCat | Ma4003F03_te240 | 18365 | 18717 | 353 | reverse | automatic | Ma4003F03_te240 | |
25 | man_ms715_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te250 | 18718 | 20718 | 2001 | reverse | automatic | Ma4003F03_te250 | |
26 | man_ms716_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te260 | 19647 | 20009 | 363 | forward | automatic | Ma4003F03_te260 | |
27 | man_ms717_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te270 | 20761 | 20792 | 32 | forward | automatic | Ma4003F03_te270 | |
28 | man_ms706_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te280 | 20821 | 21941 | 1121 | forward | automatic | Ma4003F03_te280 | |
29 | man_ms707_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te290 | 21942 | 22036 | 95 | forward | automatic | Ma4003F03_te290 | |
30 | man_ms735_Ma4003F03_Musa_Recon_113_Malign_4:LARD | Ma4003F03_te300 | 22037 | 24498 | 2462 | reverse | automatic | Ma4003F03_te300 | |
31 | Ma4003F03_te305 | Ma4003F03_te305 | 25176 | 29759 | 4584 | forward | curated | Ma4003F03_te305 Retrotransposon LTR LARD Clio | cpoiron |
32 | man_ms741_Ma4003F03_Musa_Grouper_212_Malign_18:LTRcomp | Ma4003F03_te310 | 25186 | 29756 | 4571 | reverse | automatic | | cpoiron |
33 | man_ms744_Ma4003F03_Musa_Recon_141_Malign_11:LTRuncomp | Ma4003F03_te330 | 30913 | 43500 | 12588 | forward | curated | retrotranspson: LTR: Copia : RE8: Ma4003F03_te330 | cpoiron |
34 | man_ms729_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te390 | 42112 | 42147 | 36 | forward | automatic | Ma4003F03_te390 | |
35 | man_ms730_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te430 | 49536 | 49688 | 153 | reverse | automatic | Ma4003F03_te430 | |
36 | man_ms731_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te440 | 49689 | 49713 | 25 | forward | automatic | Ma4003F03_te440 | |
37 | man_ms691_Ma4003F03_Musa_Grouper_243_Malign_4:LTRuncomp | Ma4003F03_te460 | 63867 | 72094 | 8228 | reverse | curated | retrotransposon~ LTR~ to_fill~ missing_repeat_family~ Ma4003F03_te460~ complete~ missing_completeness | lengelle |
38 | man_ms693_Ma4003F03_Musa_Grouper_243_Malign_4:LTRuncomp | Ma4003F03_te500 | 71516 | 71580 | 65 | forward | automatic | Ma4003F03_te500 | |
39 | man_ms718_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te510 | 73141 | 73732 | 592 | forward | automatic | Ma4003F03_te510 | |
40 | man_ms753_Ma4003F03_Musa_Grouper_253_Malign_3:LTRuncomp | Ma4003F03_te520 | 75690 | 77386 | 1697 | forward | automatic | Ma4003F03_te520 | |
41 | man_ms762_Ma4003F03_Musa_Recon_80_Malign_4:LTRuncomp | Ma4003F03_te530 | 77387 | 77649 | 263 | reverse | automatic | Ma4003F03_te530 | |
42 | man_ms719_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te540 | 77675 | 77745 | 71 | reverse | automatic | Ma4003F03_te540 | |
43 | man_ms720_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te550 | 77751 | 78714 | 964 | forward | automatic | Ma4003F03_te550 | |
44 | man_ms754_Ma4003F03_Musa_Grouper_121_Malign_3:LARD | Ma4003F03_te590 | 78695 | 82789 | 4095 | reverse | curated | retrotransposon: LTR: Circe: Copia: Ma4003F03_te590 (3' fragment) | cpoiron |
45 | man_ms723_Ma4003F03_Musa_Grouper_277_Malign_3:confused | Ma4003F03_te620 | 83919 | 84895 | 977 | forward | curated | retrotransposon: LTR : LARD: Clio: Ma4003F03_te620( 5' fragment) | cpoiron |
46 | man_ms763_Ma4003F03_Musa_Recon_80_Malign_4:LTRuncomp | Ma4003F03_te670 | 90164 | 90560 | 397 | forward | automatic | Ma4003F03_te670 | |
47 | man_ms769_Ma4003F03_Musa_Recon_346_Malign_5:confused | Ma4003F03_te680 | 90303 | 90393 | 91 | forward | automatic | Ma4003F03_te680 | |
48 | man_ms733_Ma4003F03_Musa_Recon_352_Malign_9:confused | Ma4003F03_te690 | 90394 | 90481 | 88 | forward | automatic | Ma4003F03_te690 | |
49 | man_ms738_Ma4003F03_Musa_Recon_113_Malign_4:LARD | Ma4003F03_te700 | 100434 | 102931 | 2498 | forward | automatic | Ma4003F03_te700 | |
50 | man_ms710_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te710 | 102933 | 103041 | 109 | reverse | automatic | Ma4003F03_te710 | |
51 | man_ms711_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te720 | 103042 | 105410 | 2369 | reverse | automatic | Ma4003F03_te720 | |
52 | man_ms712_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te730 | 104531 | 104965 | 435 | reverse | automatic | Ma4003F03_te730 | |
53 | man_ms713_Ma4003F03_Musa_Recon_40_Malign_3:LTRuncomp | Ma4003F03_te740 | 105411 | 105494 | 84 | forward | automatic | Ma4003F03_te740 | |
54 | man_ms739_Ma4003F03_Musa_Recon_113_Malign_4:LARD | Ma4003F03_te750 | 105495 | 105742 | 248 | forward | automatic | Ma4003F03_te750 | |
55 | man_ms749_Ma4003F03_Musa_Recon_9_Malign_13:LTRuncomp | Ma4003F03_te760 | 105743 | 106143 | 401 | reverse | automatic | Ma4003F03_te760 | |
56 | man_ms740_Ma4003F03_Musa_Recon_113_Malign_4:LARD | Ma4003F03_te770 | 106527 | 107196 | 670 | forward | automatic | Ma4003F03_te770 | |
57 | man_ms759_Ma4003F03_Musa_Recon_287_Malign_3:LTRuncomp | Ma4003F03_te810 | 108696 | 114415 | 5720 | reverse | curated | retrotransposon: LTR: RE5 : Copia: Ma4003F03_te810 | cpoiron |
58 | man_ms757_Ma4003F03_Musa_Recon_240_Malign_7:LTRcomp | Ma4003F03_te820 | 115114 | 115434 | 321 | forward | automatic | Ma4003F03_te820 | |
59 | man_ms689_Ma4003F03_Musa_Recon_325_Malign_12:NoCat | Ma4003F03_te830 | 116383 | 120929 | 4547 | forward | curated | Ma4003F03_te830 LTR Retrotransposon LARD Clio no TSD | cpoiron |