Musaceae Statistics

GNPAnnot Musaceae Statistics
Unique NameClone NameAliasAccession NumberLength (bp)Predicted Gene CountCurrent Gene countCurated Gene CountObsolete Gene CountCurrent Gene Density (bp/gene)%Current Gene (scaffold length)%Curated Gene (scaffold length)%Curated Gene (overall genes)Predicted TE CountCurrent TE CountCurated TE CountObsolete TE CountCurrent TE Density (bp/TE)%Current TE (scaffold length)%Curated TE (scaffold length)%Curated TE (overall TE)Current TE Gene countCurated TE Gene count
scaffold_0001Ma4001J14MA4-1J14AC22603510463730000n/a0%0%0%70443527237848%25%50%00
scaffold_0002Ma4001C21MA4-1C21 14562924000n/a0%0%0%71434729338762%46%66%00
scaffold_0005Ma4071P20MA4-71P20AC2260459524212000n/a0%0%0%181810529111%5%6%00
scaffold_0006Ma4002G172G17AC226036378473000n/a0%0%0%2922107172059%37%34%00
scaffold_0008MbP008A02MBP-8A2AC22605412433624000n/a0%0%0%20200062174%n/a0%00
scaffold_0009MbP036B13MBP-36B13 22369445000n/a0%0%0%0202001118515%15%n/a00
scaffold_0012Ma4003F03MA4-3F3AC22603812482536000n/a0%0%0%84593426211659%33%40%00
scaffold_0013Ma4004L11MA4-4L11AC2260415870411000n/a0%0%0%323200183525%n/a0%00
scaffold_0015Ma4003G18MA4-3G18AC2260398626521000n/a0%0%0%333300261410%n/a0%00
scaffold_0016Ma4009F20MA4-9F20AC2260499230321000n/a0%0%0%28280032976%n/a0%00
scaffold_0017Ma4042M13MA4_42M13AC186749295677000n/a0%0%0%0000n/an/an/an/a00
scaffold_0018Ma4052N02MA4-52N2AC2260427302312000n/a0%0%0%39251714292139%33%44%00
scaffold_0019MbP071C19MBP_71C19AP00932513304126000n/a0%0%0%601605913304113%13%100%00
scaffold_0021MBP-32N20MbP032N20c 25336656000n/a0%0%0%139212101206518%18%15%00
scaffold_0023Ma4057L19MA4-57L19AC2260439530319000n/a0%0%0%27270035306%n/a0%00
scaffold_0025Ma4069C10MA4-69C10AC2260447417417000n/a0%0%0%363343224817%8%11%00
scaffold_0027MbP064B17MBP-64B17AC22605219839537000n/a0%0%0%959253215621%2%5%00
scaffold_0029MbP094I16MBP_94I16AP00932611924429000n/a0%0%0%65343231350732%17%49%00
scaffold_0030MbP091N22MBP_91N22AC18675515424636000n/a0%0%0%414100376211%n/a0%00
scaffold_0031MbP006L16MBP-6L16AC22605313644632000n/a0%0%0%535300257424%n/a0%00
scaffold_0032MbP081C12MBP_81C12AC18675414297324000n/a0%0%0%484800297914%n/a0%00
scaffold_0033MbP008E04MBP-8E4AC22605510612114000n/a0%0%0%504852221120%13%10%00
scaffold_0034Ma4111B14MA4_111B14AC18695414409124000n/a0%0%0%545321271912%3%4%00
scaffold_0035Ma4054B05MA4_54B05AC1867535410612000n/a0%0%0%32181714300670%57%53%00
scaffold_0036Ma4099N22MA4-99N22AC22604813466234000n/a0%0%0%85513931264079%33%46%00
scaffold_0037Ma4008L21MA4_8L21AC18674811351929000n/a0%0%0%23230049364%n/a0%00
scaffold_0038Ma4005B18MA4-5B18 8156014000n/a0%0%0%33151918543728%24%58%00
scaffold_0039Ma4078I12MA4_78I12AC18675014817041000n/a0%0%0%122765145195092%34%42%00
scaffold_0040Ma4002N14MA4-2N14 6224211000n/a0%0%0%4400155611%n/a0%00
scaffold_0041Ma4007O19MA4-7O19 12706230000n/a0%0%0%84731911174158%20%23%00
scaffold_0042Ma4009J11MA4-9J11 7412216000n/a0%0%0%15151049414%1%7%00
scaffold_0043MbP031O07MBP_31O07AP00933413152632000n/a0%0%0%16426151141505949%42%92%00
scaffold_0045MaC088K20MAC-88K20AC22605115271130000n/a0%0%0%62658522545219%19%94%00
scaffold_0046Ma4082I11MA4_82I11AC18695510223216000n/a0%0%0%404000255612%n/a0%00
scaffold_0047Ma4086B03MA4-86B3AC2260478776617000n/a0%0%0%464175214144%15%15%00
scaffold_0048C4BAMMuG9C4BAM-MuG9 7326811000n/a0%0%0%44291915252648%36%43%00
scaffold_0049C4BAMMuH9C4BAM-MuH9 8272314000n/a0%0%0%20200041367%n/a0%00
scaffold_0050Ma4011M06MA4-11M6AC226031613357000n/a0%0%0%15150040896%n/a0%00
scaffold_0051Ma4012B06MA4-12B6AC2260329129315000n/a0%0%0%6759138154744%15%19%00
scaffold_0052Ma4017L09MA4-17L9AC2260339207820000n/a0%0%0%383800242313%n/a0%00
scaffold_0053Ma4018J06MA4-18J6AC2260347632718000n/a0%0%0%202000381617%n/a0%00
scaffold_0054Ma4025J11MA4_25J11AC18674610501921000n/a0%0%0%242400437610%n/a0%00
scaffold_0055Ma4030C11MA4-30C11AC2260377116317000n/a0%0%0%393900182513%n/a0%00
scaffold_0056Ma4048G03MA4-48G3AC22604010894818000n/a0%0%0%444400247613%n/a0%00
scaffold_0057Ma4054N07MA4_54N07AC1867519644320000n/a0%0%0%19190050768%n/a0%00
scaffold_0058Ma4064C22MA4_64C22AC1867528093220000n/a0%0%0%5042108192729%10%20%00
scaffold_0059Ma4072F16MA4-72F16AC22604618012446000n/a0%0%0%105902615200147%20%25%00
scaffold_0060Ma4106O17MA4_106O17AC18674714102529000n/a0%0%0%26260054243%n/a0%00
scaffold_0061Ma4112I10MA4_112I10AC18675610244123000n/a0%0%0%35435312561016%16%100%00
scaffold_0062Ma4125A12MA4-125A12AC22619611085324000n/a0%0%0%574284263933%20%14%00
scaffold_0064MaC077E20MAC-77E20AC22605017772941000n/a0%0%0%71591712301227%17%24%00
Overall: 51 scaffolds56748511186000n/an/an/an/a24761753783612323727%13%45%00

Calculation details:

  • genes count excludes transposable element genes (TE gene);
  • genes length excludes transposable element genes (TE gene) and transposable elements (TE) inside introns;
  • predicted genes are genes found by Eugene;
  • current gene count includes non-obsolete predicted or curated genes;
  • curated genes include obsolete genes;
  • genes density is given by the formula: scaffold lengthcurrent gene count
  • percent of genes is given by the formula: overall current gene lengthscaffold length;
  • percent of curated genes over scaffold length is given by the formula: overall curated gene lengthscaffold length
  • percent of curated genes over all genes is given by the formula: curated gene countpredicted gene count
  • predicted transposable elements (TE) are TE found by Repet;
  • current TE count includes non-obsolete predicted or curated TE with a /mobile_element qualifier;
  • curated TE include obsolete TE;
  • TE density is given by the formula: scaffold lengthcurrent TE count
  • curated TE density is given by the formula: scaffold lengthcurated TE count
  • percent of TE is given by the formula: overall current TE lengthscaffold length
  • percent of curated TE over all scaffold length is given by the formula: overall curated TE lengthscaffold length
  • percent of curated TE over all transposable elements is given by the formula: curated TE countpredicted TE count

Note: these statistics are restricted to public data only.